STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT11245.1Hypothetical protein; COG3568 Metal-dependent hydrolase. (275 aa)    
Predicted Functional Partners:
EAT13409.1
Aminotransferase, class V; COG0520 Selenocysteine lyase.
  
 
   0.834
EAT11695.1
COG0520 Selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.802
EAT11246.1
COG0526 Thiol-disulfide isomerase and thioredoxins.
       0.794
EAT11244.1
Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG2199 FOG: GGDEF domain.
  
    0.620
EAT12142.1
Hypothetical protein.
  
     0.565
EAT11247.1
COG2863 Cytochrome c553.
       0.546
zipA
Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.
  
     0.465
EAT12128.1
Anti-sigma factor MucA; COG3073 Negative regulator of sigma E activity.
  
     0.459
EAT10924.1
HAD-superfamily hydrolase YedP; COG3769 Predicted hydrolase (HAD superfamily).
   
    0.431
EAT11225.1
Protein containing CheW-like domain; COG0835 Chemotaxis signal transduction protein.
  
     0.428
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.