STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT10793.1Putative protein with GGDEF motif and GAF domain; COG2199 FOG: GGDEF domain. (65 aa)    
Predicted Functional Partners:
EAT12983.1
Putative sensor protein; COG0642 Signal transduction histidine kinase.
 
 
 0.962
EAT12600.1
COG0642 Signal transduction histidine kinase.
  
 
 0.956
EAT11365.1
COG0642 Signal transduction histidine kinase.
  
 
 0.956
EAT13337.1
COG0642 Signal transduction histidine kinase.
 
 
 0.942
EAT10741.1
COG0642 Signal transduction histidine kinase.
  
 
 0.922
EAT10714.1
Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine; COG0642 Signal transduction histidine kinase.
 
 
 0.885
EAT11926.1
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains); COG0840 Methyl-accepting chemotaxis protein.
 
 
 0.876
EAT13220.1
COG0642 Signal transduction histidine kinase.
  
 
 0.869
EAT10720.1
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); COG2199 FOG: GGDEF domain.
 
 
 0.866
EAT12981.1
Sensory box/GGDEF/GAF/EAL domain protein; COG2203 FOG: GAF domain.
 
 
 0.865
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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