Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ApbC | EAT13503.1 | RED65_08929 | RED65_08934 | ATPase involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. | Hypothetical protein. | 0.773 |
ApbC | EAT13505.1 | RED65_08929 | RED65_08944 | ATPase involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. | Hypothetical protein. | 0.405 |
ApbC | metG | RED65_08929 | RED65_08939 | ATPase involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.810 |
EAT13503.1 | ApbC | RED65_08934 | RED65_08929 | Hypothetical protein. | ATPase involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. | 0.773 |
EAT13503.1 | EAT13505.1 | RED65_08934 | RED65_08944 | Hypothetical protein. | Hypothetical protein. | 0.405 |
EAT13503.1 | metG | RED65_08934 | RED65_08939 | Hypothetical protein. | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.572 |
EAT13505.1 | ApbC | RED65_08944 | RED65_08929 | Hypothetical protein. | ATPase involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. | 0.405 |
EAT13505.1 | EAT13503.1 | RED65_08944 | RED65_08934 | Hypothetical protein. | Hypothetical protein. | 0.405 |
EAT13505.1 | metG | RED65_08944 | RED65_08939 | Hypothetical protein. | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.529 |
EAT13505.1 | rnfA | RED65_08944 | RED65_08949 | Hypothetical protein. | Predicted NADH:ubiquinone oxidoreductase, subunit RnfA; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.404 |
EAT13505.1 | rnfB | RED65_08944 | RED65_08954 | Hypothetical protein. | Predicted NADH:ubiquinone oxidoreductase, subunit RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.404 |
EAT13505.1 | rnfC | RED65_08944 | RED65_08959 | Hypothetical protein. | Electron transport complex protein RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | 0.404 |
EAT13505.1 | rnfD | RED65_08944 | RED65_08964 | Hypothetical protein. | Predicted NADH:ubiquinone oxidoreductase, subunit RnfD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family. | 0.404 |
EAT13505.1 | rnfE | RED65_08944 | RED65_08974 | Hypothetical protein. | NADH-ubiquinone oxidoreductase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.404 |
EAT13505.1 | rnfG | RED65_08944 | RED65_08969 | Hypothetical protein. | Predicted NADH:ubiquinone oxidoreductase, subunit RnfG; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family. | 0.404 |
metG | ApbC | RED65_08939 | RED65_08929 | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | ATPase involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. | 0.810 |
metG | EAT13503.1 | RED65_08939 | RED65_08934 | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Hypothetical protein. | 0.572 |
metG | EAT13505.1 | RED65_08939 | RED65_08944 | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Hypothetical protein. | 0.529 |
metG | rnfA | RED65_08939 | RED65_08949 | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Predicted NADH:ubiquinone oxidoreductase, subunit RnfA; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.480 |
metG | rnfB | RED65_08939 | RED65_08954 | Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Predicted NADH:ubiquinone oxidoreductase, subunit RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.480 |
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