STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13550.1Protein containing tetratricopeptide repeats; COG3170 Tfp pilus assembly protein FimV. (1089 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.841
EAT12426.1
Type 4 fimbrial biogenesis protein PilN; COG3166 Tfp pilus assembly protein PilN.
  
  
 0.821
EAT13539.1
Hypothetical protein; COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
 
    0.788
PilO
Type 4 fimbrial biogenesis protein PilO; COG3167 Tfp pilus assembly protein PilO.
  
  
 0.786
EAT12423.1
Type 4 fimbrial biogenesis protein PilQ; COG4796 Type II secretory pathway, component HofQ.
  
  
 0.771
EAT13336.1
Type 4 fimbrial biogenesis protein PilZ; COG3215 Tfp pilus assembly protein PilZ.
  
     0.766
EAT12424.1
Type 4 fimbrial biogenesis protein PilP; COG3168 Tfp pilus assembly protein PilP.
  
    0.757
EAT12874.1
MJ0042 family finger-like domain protein.
  
     0.754
EAT12427.1
COG4972 Tfp pilus assembly protein, ATPase PilM.
  
  
 0.745
EAT13100.1
COG1652 Uncharacterized protein containing LysM domain.
  
   
 0.736
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.