STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13571.1Probable transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (340 aa)    
Predicted Functional Partners:
EAT13572.1
Chemotaxis sensory transducer, Cache sensor; COG0840 Methyl-accepting chemotaxis protein.
       0.628
EAT13569.1
Bile acid transporter family protein; COG0385 Predicted Na+-dependent transporter.
  
    0.525
EAT13570.1
Hypothetical protein; COG0385 Predicted Na+-dependent transporter.
  
    0.525
EAT13565.1
Putative transporter; COG0477 Permeases of the major facilitator superfamily.
       0.506
EAT13566.1
Hypothetical protein; COG4257 Streptogramin lyase.
       0.506
EAT13568.1
Hypothetical protein; COG0451 Nucleoside-diphosphate-sugar epimerases.
       0.506
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.