STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13587.1Transcriptional regulators, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (297 aa)    
Predicted Functional Partners:
EAT12594.1
Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.748
EAT13208.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.720
EAT13558.1
Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.715
EAT13867.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.703
EAT13729.1
Regulatory protein, LysR:LysR, substrate-binding; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.585
EAT13586.1
COG0778 Nitroreductase.
       0.551
EAT13820.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.543
CysB
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.534
EAT12662.1
Possible transcriptional activator of LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.514
EAT13058.1
Oxidative stress regulatory protein OxyR, putative; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.485
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.