STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13589.1COG2259 Predicted membrane protein. (127 aa)    
Predicted Functional Partners:
EAT13590.1
COG1764 Predicted redox protein, regulator of disulfide bond formation.
  
    0.785
EAT11793.1
COG3220 Uncharacterized protein conserved in bacteria.
  
  
 0.514
EAT11794.1
COG3219 Uncharacterized protein conserved in bacteria.
  
  
 0.500
EAT13588.1
Hypothetical protein.
       0.486
EAT13591.1
Hypothetical protein.
       0.439
EAT13592.1
Hypothetical protein.
       0.439
EAT12779.1
Hypothetical protein.
  
     0.436
EAT12641.1
DSBA-like thioredoxin domain protein.
  
     0.419
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.