STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YbfEHypothetical protein; COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain. (115 aa)    
Predicted Functional Partners:
EAT13559.1
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
     0.671
EAT12795.1
Conjugative transfer protein.
  
     0.649
EAT13812.1
GluG; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.629
EAT13360.1
Esterase/lipase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
 
   0.605
EAT12005.1
Hypothetical protein; COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
  
     0.594
EAT13870.1
GluG; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.590
EAT12517.1
COG1749 Flagellar hook protein FlgE.
  
     0.576
EAT13055.1
OmpA-like transmembrane domain protein; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.556
EAT10830.1
Esterase/lipase/thioesterase family protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
 
   0.542
EAT12009.1
COG1360 Flagellar motor protein.
  
     0.501
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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