STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13667.1COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs. (163 aa)    
Predicted Functional Partners:
EAT13668.1
COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
 
 0.995
EAT13734.1
COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
 
 0.994
XdhB
COG4631 Xanthine dehydrogenase, molybdopterin-binding subunit B.
 
     0.958
EAT13736.1
Hypothetical protein; COG2068 Uncharacterized MobA-related protein.
 
  
 0.886
EAT13666.1
COG2010 Cytochrome c, mono- and diheme variants.
  
  
 0.832
EAT13735.1
Hypothetical protein; COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family.
 
  
 0.830
XdhA
COG4630 Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A.
    
0.638
XdhC
COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family.
 
  
 0.585
Pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 
 0.443
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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