STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13698.1Hypothetical protein; COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides. (94 aa)    
Predicted Functional Partners:
oadG
Hypothetical protein; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation.
  
     0.722
EAT11816.1
COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.
  
     0.635
EAT11544.1
COG4913 Uncharacterized protein conserved in bacteria.
  
     0.526
EAT10833.1
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.519
EAT13699.1
COG2207 AraC-type DNA-binding domain-containing proteins.
       0.495
EAT11856.1
CheY-like receiver protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
     0.493
EAT12489.1
Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
  
     0.489
EAT13298.1
Hypothetical protein.
  
     0.478
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
  
     0.459
EAT13697.1
Hypothetical protein.
       0.458
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.