STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13722.1Putative polysaccharide deacetylase family protein; COG0726 Predicted xylanase/chitin deacetylase. (348 aa)    
Predicted Functional Partners:
EAT13721.1
Hypothetical protein; COG2214 DnaJ-class molecular chaperone.
 
     0.874
EAT12614.1
Predicted peptidoglycan hydrolase, FlgJ family protein; COG2992 Uncharacterized FlgJ-related protein.
 
     0.792
EAT13144.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
  
 0.692
EAT11761.1
Hypothetical protein; COG0481 Membrane GTPase LepA.
  
     0.661
greB-2
Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.
       0.559
EAT13720.1
1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative; COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase.
       0.559
EAT10760.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
  
     0.507
EAT11445.1
Hypothetical protein.
  
     0.453
EAT11311.1
Hypothetical protein.
  
     0.451
greB
Transcription elongation factor GreB.
       0.441
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.