STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tpxPeroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily. (165 aa)    
Predicted Functional Partners:
SodB
Manganese superoxide dismutase Mn-SOD; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.852
EAT13760.1
Hypothetical protein.
       0.553
TrxB
Thioredoxin reductase, FAD/NAD(P)-binding protein; COG0492 Thioredoxin reductase.
  
  
 0.541
minE
Cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
    0.493
CysM
COG0031 Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
   
  
 0.481
fur
COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
   
  
 0.441
EAT10859.1
Type IV secretory pathway protease TraF-like protein; COG0681 Signal peptidase I.
   
    0.438
LepB
COG0681 Signal peptidase I; Belongs to the peptidase S26 family.
   
    0.438
EAT11181.1
FAD-dependent oxidoreductase; Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3) component and related enzyme; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
  
  
 0.434
EAT11699.1
COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
  
    0.424
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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