STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13770.1COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family. (675 aa)    
Predicted Functional Partners:
GltB
COG0067 Glutamate synthase domain 1.
  
 
 0.998
EAT12691.1
Hypothetical protein; COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
  
 0.967
EAT12927.1
COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
  
 0.967
EAT13461.1
COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.943
EAT13460.1
COG2025 Electron transfer flavoprotein, alpha subunit.
  
 
 0.936
EAT11057.1
Putative glutamate synthetase.
  
 
 0.802
EAT11937.1
Putative Oxidoreductase; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 0.770
EAT12110.1
COG0069 Glutamate synthase domain 2; Belongs to the glutamate synthase family.
  
 
 0.768
EAT12901.1
Probable 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
  
 0.743
FadB
Fatty oxidation complex, alpha subunit; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
 
  
 0.724
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.