STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13785.1Antioxidant, AhpC/Tsa family protein; COG0450 Peroxiredoxin. (207 aa)    
Predicted Functional Partners:
TrxB
Thioredoxin reductase, FAD/NAD(P)-binding protein; COG0492 Thioredoxin reductase.
  
 
 0.909
AhpF
COG3634 Alkyl hydroperoxide reductase, large subunit.
  
  
 0.806
fur
COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
  
  
 0.630
EAT13067.1
COG1773 Rubredoxin.
  
  
 0.600
EAT10864.1
Hypothetical protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 0.562
EAT10999.1
Thioredoxin family protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 0.562
EAT12231.1
Thiol:disulfide interchange protein DsbE; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 0.562
EAT11806.1
Thiol:disulfide interchange protein DsbE, putative; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 0.562
EAT11980.1
COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 0.562
EAT13818.1
Ferritin and Dps; COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.
  
  
 0.555
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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