STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13808.1COG2130 Putative NADP-dependent oxidoreductases. (332 aa)    
Predicted Functional Partners:
DkgB
Putative reductase oxidoreductase protein; COG0656 Aldo/keto reductases, related to diketogulonate reductase.
  
 
 0.639
EAT13726.1
COG3173 Predicted aminoglycoside phosphotransferase.
 
    0.582
EAT13807.1
Putative transcriptional regulatory protein (LysR family); COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.499
CysZ
Putative sulfate transport protein CysZ; COG2981 Uncharacterized protein involved in cysteine biosynthesis.
     
 0.486
EAT13527.1
Epoxide hydrolase-related protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
    0.433
EAT13728.1
COG1960 Acyl-CoA dehydrogenases.
  
    0.411
EAT12499.1
COG4325 Predicted membrane protein.
  
     0.401
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.