STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13825.1Hypothetical protein; COG0633 Ferredoxin. (159 aa)    
Predicted Functional Partners:
NrdB
COG0208 Ribonucleotide reductase, beta subunit.
 
  
 0.969
NrdA
Ribonucleotide-diphosphate reductase alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
 
  
 0.937
EAT12993.1
COG1145 Ferredoxin.
  
 
 0.800
bcp
Bacterioferritin comigratory protein; COG1225 Peroxiredoxin.
       0.682
EAT11699.1
COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
  
 0.661
nfuA
Thioredoxin-like protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
 
 0.651
EAT11268.1
Hypothetical protein; COG0859 ADP-heptose:LPS heptosyltransferase.
   
 
 0.633
EAT10715.1
COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
   
 0.584
EAT13770.1
COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
   
 0.584
EAT12418.1
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
    
 0.548
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.