STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT12770.1Hypothetical protein. (395 aa)    
Predicted Functional Partners:
EAT11796.1
COG2853 Surface lipoprotein.
    
 
 0.755
EAT12773.1
Sodium-solute symporter/sensory box histidine kinase/response regulator, putative; COG0591 Na+/proline symporter.
 
  
 0.680
EAT12769.1
COG4327 Predicted membrane protein.
  
    0.599
EAT12768.1
Sodium/solute symporter family protein; COG4147 Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.579
EAT12772.1
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
    0.560
EAT12069.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
   
 0.534
EAT11183.1
COG4798 Predicted methyltransferase.
  
     0.494
EAT12070.1
Putative lipoprotein.
  
     0.493
EAT12766.1
CBS domain protein; COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains.
 
     0.484
EAT11711.1
Hypothetical protein; COG0172 Seryl-tRNA synthetase.
  
 
 0.474
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.