STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT11323.1Putative orphan protein; COG3137 Putative salt-induced outer membrane protein. (261 aa)    
Predicted Functional Partners:
EAT11324.1
Putative mechanosensitive channel protein (MscS family); COG0668 Small-conductance mechanosensitive channel.
       0.705
EAT11325.1
COG2252 Permeases.
       0.614
EAT12394.1
COG3151 Uncharacterized protein conserved in bacteria.
  
     0.510
EAT12614.1
Predicted peptidoglycan hydrolase, FlgJ family protein; COG2992 Uncharacterized FlgJ-related protein.
  
     0.471
EAT11761.1
Hypothetical protein; COG0481 Membrane GTPase LepA.
  
     0.454
EAT13519.1
Hypothetical protein.
  
     0.435
EAT11728.1
Protein-disulfide isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
  
  
 0.432
RrtA
COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
  
    0.410
EAT10760.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
  
     0.403
EAT13490.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.402
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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