STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT11333.1Amine oxidase, flavin-containing; COG2907 Predicted NAD/FAD-binding protein. (424 aa)    
Predicted Functional Partners:
EAT11335.1
COG2230 Cyclopropane fatty acid synthase and related methyltransferases.
  
 0.995
EAT11334.1
Hypothetical protein.
  
 0.968
EAT11332.1
Hypothetical protein.
 
   
 0.940
EAT11327.1
COG3806 Anti-sigma factor.
 
  
 0.901
EAT11331.1
COG1398 Fatty-acid desaturase.
 
     0.847
EAT11337.1
Oxidoreductase, short-chain dehydrogenase/reductase family protein; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
   
 0.846
PhrB
COG0415 Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
   
 0.844
EAT11422.1
Hypothetical membrane protein.
 
   
 0.795
EAT11329.1
COG3380 Predicted NAD/FAD-dependent oxidoreductase.
       0.753
EAT11328.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.730
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.