STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT12641.1DSBA-like thioredoxin domain protein. (423 aa)    
Predicted Functional Partners:
EAT12624.1
Hypothetical protein; COG5434 Endopolygalacturonase.
  
     0.558
EAT12642.1
Zinc-containing alcohol dehydrogenase family protein; COG1064 Zn-dependent alcohol dehydrogenases.
       0.497
EAT11207.1
Haloalkane dehalogenase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.488
EAT13223.1
Thioesterase superfamily protein; COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
     0.474
EAT12623.1
Hypothetical protein.
  
     0.456
EAT11770.1
Hypothetical protein; COG0778 Nitroreductase.
  
     0.450
EAT10902.1
COG2366 Protein related to penicillin acylase.
  
     0.425
EAT12640.1
Membrane protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
       0.424
EAT13589.1
COG2259 Predicted membrane protein.
  
     0.419
EAT12778.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.418
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.