STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT12683.1Hypothetical protein; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component. (216 aa)    
Predicted Functional Partners:
EAT12685.1
Hypothetical protein.
 
     0.953
EAT12686.1
Putative protozoan/cyanobacterial globin family protein; COG2346 Truncated hemoglobins.
 
     0.937
EAT12684.1
Putative HAMP domain/GGDEF domain/EAL domain protein; COG2199 FOG: GGDEF domain.
     0.874
EAT10773.1
Hypothetical protein.
   
   0.807
EAT12680.1
COG0642 Signal transduction histidine kinase.
       0.512
EAT12681.1
Response regulator; COG0784 FOG: CheY-like receiver.
       0.512
EAT12682.1
COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
      0.512
CoxB
Cytochrome-c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
  
 0.488
EAT13731.1
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.476
EAT12375.1
Hypothetical protein.
  
     0.467
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.