STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT12914.1Hypothetical protein; COG3487 Uncharacterized iron-regulated protein. (433 aa)    
Predicted Functional Partners:
EAT12913.1
COG0560 Phosphoserine phosphatase.
       0.818
EAT11930.1
Iron(III) ABC transporter, periplasmic iron(III)-binding protein; COG1840 ABC-type Fe3+ transport system, periplasmic component.
  
    0.802
EAT12464.1
COG1840 ABC-type Fe3+ transport system, periplasmic component.
   
    0.726
EAT11716.1
COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
  
 0.620
EAT12207.1
BFD-like (2Fe-2S)-binding region protein; COG2906 Bacterioferritin-associated ferredoxin.
  
  
 0.616
EAT11241.1
Predicted periplasmic lipoprotein.
 
    0.605
EAT13812.1
GluG; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.599
EAT13055.1
OmpA-like transmembrane domain protein; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.578
EAT11544.1
COG4913 Uncharacterized protein conserved in bacteria.
  
     0.570
EAT12517.1
COG1749 Flagellar hook protein FlgE.
  
     0.539
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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