STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT12976.1Tfp pilus assembly protein tip-associated adhesin PilY1-like. (734 aa)    
Predicted Functional Partners:
EAT13279.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.768
EAT13812.1
GluG; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.746
EAT11105.1
Hypothetical protein.
  
     0.743
EAT13870.1
GluG; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.732
EAT13055.1
OmpA-like transmembrane domain protein; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.727
EAT12007.1
COG4719 Uncharacterized protein conserved in bacteria.
  
     0.714
EAT12009.1
COG1360 Flagellar motor protein.
  
     0.703
EAT10774.1
COG4206 Outer membrane cobalamin receptor protein.
  
     0.657
FliD
COG1345 Flagellar capping protein.
  
     0.652
EAT12676.1
Protein containing QXW lectin repeats.
  
     0.649
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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