STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT12995.1Oxidoreductase, GMC family protein; COG2303 Choline dehydrogenase and related flavoproteins. (530 aa)    
Predicted Functional Partners:
EAT12996.1
Hypothetical protein.
 
   
 0.957
EAT12997.1
COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
 
  
 0.835
EAT13666.1
COG2010 Cytochrome c, mono- and diheme variants.
   
 
 0.822
EAT12998.1
COG1309 Transcriptional regulator.
 
  
 0.812
EAT11535.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
    
 0.558
EAT11235.1
COG2319 FOG: WD40 repeat.
    
 0.558
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.555
EAT12192.1
Alanine racemase-like protein; COG3616 Predicted amino acid aldolase or racemase.
 
     0.517
EAT12076.1
Putative unknown membrane associated protein; COG0457 FOG: TPR repeat.
    
 0.490
EAT11781.1
Protein containing tetratricopeptide repeats; COG0457 FOG: TPR repeat.
    
 0.490
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.