STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13014.1Hypothetical protein; COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component. (198 aa)    
Predicted Functional Partners:
EAT11796.1
COG2853 Surface lipoprotein.
 
 
 
 0.881
lptD
Organic solvent tolerance protein, putative; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
   
 0.612
GltB
COG0067 Glutamate synthase domain 1.
     
 0.560
EAT13012.1
COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
     
 0.547
EAT13015.1
Hypothetical protein.
       0.533
EAT13013.1
Putative transmembrane protein; COG0552 Signal recognition particle GTPase.
       0.503
hisB
COG0131 Imidazoleglycerol-phosphate dehydratase.
     
 0.485
EAT11644.1
COG0586 Uncharacterized membrane-associated protein.
  
  
 0.443
EAT13151.1
OmpA family protein; COG0226 ABC-type phosphate transport system, periplasmic component.
  
 
 0.439
EAT13305.1
ATP-grasp domain-containing protein; COG0825 Acetyl-CoA carboxylase alpha subunit.
  
 
 0.433
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.