STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ProWCOG4176 ABC-type proline/glycine betaine transport system, permease component. (313 aa)    
Predicted Functional Partners:
ProV
COG4175 ABC-type proline/glycine betaine transport system, ATPase component.
 0.999
ProX
ABC superfamily (glycine/betaine/proline transport protein); COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
 
 0.999
ChoV
COG4175 ABC-type proline/glycine betaine transport system, ATPase component.
 0.997
EAT13579.1
COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
 
 0.997
ChoX
Putative glycine betaine-binding ABC transporter; COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
 
 0.997
ChoW
COG4176 ABC-type proline/glycine betaine transport system, permease component.
  
  
 
0.913
queG
Iron-sulfur cluster binding protein, putative; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.
       0.444
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
  
 0.431
EAT12301.1
Hypothetical protein.
       0.413
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.