STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT12411.1Hypothetical protein; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (1407 aa)    
Predicted Functional Partners:
EAT12600.1
COG0642 Signal transduction histidine kinase.
 
 
 0.923
EAT11365.1
COG0642 Signal transduction histidine kinase.
 
 
 0.923
EAT12983.1
Putative sensor protein; COG0642 Signal transduction histidine kinase.
 
 
 0.923
EAT10714.1
Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine; COG0642 Signal transduction histidine kinase.
 
 
 0.897
EAT13220.1
COG0642 Signal transduction histidine kinase.
 
 
 0.897
EAT12346.1
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; COG2202 FOG: PAS/PAC domain.
 
 
0.866
EAT11926.1
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains); COG0840 Methyl-accepting chemotaxis protein.
 
 
0.863
EAT10720.1
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); COG2199 FOG: GGDEF domain.
 
 
0.842
EAT10793.1
Putative protein with GGDEF motif and GAF domain; COG2199 FOG: GGDEF domain.
 
 
 
 0.809
EAT12773.1
Sodium-solute symporter/sensory box histidine kinase/response regulator, putative; COG0591 Na+/proline symporter.
 
 
 0.808
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.