STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT12426.1Type 4 fimbrial biogenesis protein PilN; COG3166 Tfp pilus assembly protein PilN. (183 aa)    
Predicted Functional Partners:
EAT12427.1
COG4972 Tfp pilus assembly protein, ATPase PilM.
 
 
 0.998
PilO
Type 4 fimbrial biogenesis protein PilO; COG3167 Tfp pilus assembly protein PilO.
 
 
 0.996
EAT12423.1
Type 4 fimbrial biogenesis protein PilQ; COG4796 Type II secretory pathway, component HofQ.
 
 
 0.995
EAT12424.1
Type 4 fimbrial biogenesis protein PilP; COG3168 Tfp pilus assembly protein PilP.
 
 
 0.995
EAT12450.1
Hypothetical protein.
 
 
 0.880
EAT13100.1
COG1652 Uncharacterized protein containing LysM domain.
  
 
   0.877
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
    0.825
EAT13550.1
Protein containing tetratricopeptide repeats; COG3170 Tfp pilus assembly protein FimV.
  
  
 0.821
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.818
PilW
COG3063 Tfp pilus assembly protein PilF.
  
   
 0.808
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.