STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR61056.1Phosphocarrier protein HPr; COG1925 Phosphotransferase system, HPr-related proteins. (89 aa)    
Predicted Functional Partners:
EAR61105.1
Phosphoenolpyruvate-protein phosphotransferase PtsP; COG3605 Signal transduction protein containing GAF and PtsI domains.
  
 
 0.994
ptsN
Nitrogen regulatory IIA protein; COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type).
 
 
 0.993
EAR61057.1
Hypothetical protein; Displays ATPase and GTPase activities.
  
  
 0.893
EAR61181.1
COG3160 Regulator of sigma D.
    
 
 0.848
EAR61932.1
Hypothetical protein.
    
 0.839
EAR59639.1
COG0049 Ribosomal protein S7.
  
    0.809
raiA
S30EA ribosomal protein; COG1544 Ribosome-associated protein Y (PSrp-1).
  
  
 0.805
EAR61060.1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.751
lptB
ABC transporter, ATP-binding protein; COG1137 ABC-type (unclassified) transport system, ATPase component.
  
  
 0.679
EAR62894.1
Putative fructose-1,6-bisphosphate aldolase class II; COG0191 Fructose/tagatose bisphosphate aldolase.
  
 
 0.674
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.