STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR61960.1Hydrogenase formation HypD protein; COG0409 Hydrogenase maturation factor. (385 aa)    
Predicted Functional Partners:
EAR61959.1
Hydrogenase expression/formation protein (HUPF/HYPC); COG0298 Hydrogenase maturation factor.
 
 
 0.999
EAR61961.1
Hydrogenase expression/formation protein HypE; COG0309 Hydrogenase maturation factor.
 
 0.999
EAR61949.1
Hydrogenase expression/formation protein (HUPF/HYPC); COG0298 Hydrogenase maturation factor.
  
 
 0.992
EAR61956.1
Guanine-nucleotide binding protein; COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase.
 
  
 0.980
EAR61958.1
COG0068 Hydrogenase maturation factor.
 
  
 0.979
EAR61955.1
HypA protein; COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression).
 
  
 0.964
EAR60619.1
COG0374 Ni,Fe-hydrogenase I large subunit.
 
 
 0.817
EAR61962.1
Enoyl-CoA hydratase/isomerase:Formyl transferase, N-terminal:Formyltransferase, C-terminal; COG0223 Methionyl-tRNA formyltransferase.
 
    0.795
EAR61954.1
Putative hydrogenase expression/formation protein hupK; COG0374 Ni,Fe-hydrogenase I large subunit.
     
 0.790
EAR61951.1
HupH hydrogenase expression/formation protein; COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes.
  
  
 0.779
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.