STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR61970.1Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins. (348 aa)    
Predicted Functional Partners:
EAR61412.1
Glutamate synthase large chain precursor; COG0067 Glutamate synthase domain 1.
    
  0.715
EAR61397.1
GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase.
    
  0.685
EAR61971.1
Hypothetical protein; COG3839 ABC-type sugar transport systems, ATPase components.
       0.620
EAR61504.1
COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit.
    
   0.615
EAR62299.1
Putative transcriptional regulator, AraC/XylS family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.607
EAR62687.1
Transcriptional regulator, AraC family protein; COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
  
   0.580
EAR61972.1
Glyoxalase/bleomycin resistance protein/dioxygenase; COG0346 Lactoylglutathione lyase and related lyases.
  
    0.518
EAR61262.1
Transcriptional regulator, AraC family protein; COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
  
   0.506
EAR61969.1
3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD_Fe.
       0.498
EAR62710.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
   0.477
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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