STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR61773.1NifR3/Smm1 family protein; COG0042 tRNA-dihydrouridine synthase. (298 aa)    
Predicted Functional Partners:
EAR60423.1
DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family.
 
  
 0.739
EAR61774.1
Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer; COG0840 Methyl-accepting chemotaxis protein.
       0.655
EAR61240.1
COG0442 Prolyl-tRNA synthetase.
  
 
 0.522
trmA
tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA).
 
  
 0.507
panC
Pantoate--beta-alanine ligase; COG0414 Panthothenate synthetase.
  
    0.504
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.
   
  
 0.480
EAR61759.1
COG0101 Pseudouridylate synthase.
  
 
 0.463
EAR61775.1
Hypothetical protein; COG1355 Predicted dioxygenase.
       0.461
EAR61776.1
AMMECR1.
       0.461
EAR62409.1
Hypothetical protein; COG1444 Predicted P-loop ATPase fused to an acetyltransferase.
   
  
 0.436
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.