STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR61775.1Hypothetical protein; COG1355 Predicted dioxygenase. (260 aa)    
Predicted Functional Partners:
EAR61776.1
AMMECR1.
    0.997
EAR60779.1
COG1180 Pyruvate-formate lyase-activating enzyme.
     0.970
EAR61772.1
COG1514 2'-5' RNA ligase.
 
     0.538
EAR61774.1
Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer; COG0840 Methyl-accepting chemotaxis protein.
       0.528
EAR61778.1
Histone macro-H2A1-related protein; COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1.
       0.490
EAR61777.1
Hypothetical protein; COG1396 Predicted transcriptional regulators.
       0.476
EAR61773.1
NifR3/Smm1 family protein; COG0042 tRNA-dihydrouridine synthase.
       0.461
pcm
L-isoaspartate protein carboxylmethyltransferase type II; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
  
    0.412
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.