STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR61823.1COG1309 Transcriptional regulator. (203 aa)    
Predicted Functional Partners:
EAR61822.1
Hypothetical protein; COG0143 Methionyl-tRNA synthetase.
 
     0.756
EAR59703.1
Transcriptional regulatory protein; COG1309 Transcriptional regulator.
  
     0.704
EAR61824.1
Outer membrane protein RomA; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold.
 
     0.679
EAR59994.1
Serine/threonine kinase with two-component sensor domain; COG0642 Signal transduction histidine kinase.
    
 
 0.468
EAR61825.1
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
   
   0.466
EAR62000.1
COG0642 Signal transduction histidine kinase.
    
 
 0.412
EAR62342.1
Serine/threonine kinase with two-component sensor domain; COG3899 Predicted ATPase.
    
 
 0.407
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.