STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR62598.1COG1652 Uncharacterized protein containing LysM domain. (341 aa)    
Predicted Functional Partners:
EAR61416.1
Type 4 fimbrial biogenesis protein PilQ; COG4796 Type II secretory pathway, component HofQ.
 
 
 
 0.987
EAR61417.1
COG3168 Tfp pilus assembly protein PilP.
 
 
   0.967
EAR61418.1
Type 4 fimbrial biogenesis protein PilO; COG3167 Tfp pilus assembly protein PilO.
 
 
   0.967
EAR61419.1
Type 4 fimbrial biogenesis protein PilN; COG3166 Tfp pilus assembly protein PilN.
  
 
   0.967
EAR61420.1
COG4972 Tfp pilus assembly protein, ATPase PilM.
  
 
   0.966
EAR59669.1
Type 4 fimbrial biogenesis protein PilZ; COG3215 Tfp pilus assembly protein PilZ.
  
    0.781
EAR59529.1
Type II secretion system protein; COG1459 Type II secretory pathway, component PulF.
  
 
   0.776
EAR61473.1
COG4966 Tfp pilus assembly protein PilW.
  
    0.770
EAR62599.1
SMF protein; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
       0.766
EAR61474.1
Probable type-4 fimbrial biogenesis protein; COG4967 Tfp pilus assembly protein PilV.
  
     0.763
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.