STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR62715.1Maleylacetoacetate isomerase; COG0625 Glutathione S-transferase. (209 aa)    
Predicted Functional Partners:
EAR62713.1
Fumarylacetoacetase (Fumarylacetoacetate hydrolase)(Beta-diketonase)(FAA); COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
 
 0.994
EAR61504.1
COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit.
   
 
 0.946
rpoB
COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
   
   0.905
EAR59641.1
COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit.
   
   0.903
EAR62585.1
COG0625 Glutathione S-transferase.
    
 
 0.892
EAR59733.1
Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal; COG0625 Glutathione S-transferase.
    
 
 0.892
EAR60734.1
COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32).
    
 
 0.885
rpoD
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.885
rpoZ
COG1758 DNA-directed RNA polymerase, subunit K/omega.
   
   0.861
EAR62714.1
Glyoxalase family protein; COG0346 Lactoylglutathione lyase and related lyases.
 
 
  0.856
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.