STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR62852.1Hypothetical protein; COG3307 Lipid A core - O-antigen ligase and related enzymes. (416 aa)    
Predicted Functional Partners:
EAR60070.1
Teichoic acid biosynthesis protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
  
 0.938
EAR62848.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.887
EAR62849.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
 0.868
EAR62853.1
Hypothetical protein; COG0438 Glycosyltransferase.
  
 
 0.866
EAR59937.1
Sugar transferase, putative; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.836
EAR62851.1
Hypothetical protein.
  
 
 0.834
EAR62850.1
Hypothetical protein; COG0726 Predicted xylanase/chitin deacetylase.
     
 0.810
EAR62854.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.773
EAR62825.1
COG0859 ADP-heptose:LPS heptosyltransferase.
  
 
 0.683
EAR62826.1
ADP-heptose--LPS heptosyltransferase II; COG0859 ADP-heptose:LPS heptosyltransferase.
  
 
 0.683
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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