STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR62856.1Transport protein MsbA; COG1132 ABC-type multidrug transport system, ATPase and permease components. (597 aa)    
Predicted Functional Partners:
EAR62109.1
ABC efflux transporter, ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
0.956
EAR62134.1
COG1663 Tetraacyldisaccharide-1-P 4'-kinase.
  
 0.952
EAR60268.1
ABC transporter related; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
 
0.926
EAR62857.1
LPS biosynthesis protein RfaE; COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase.
     
 0.785
EAR62458.1
COG0464 ATPases of the AAA+ class.
   
 0.742
EAR61068.1
Probable permease of ABC transporter; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
  
 0.719
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 
 0.701
dnaK
COG0443 Molecular chaperone.
  
 
 0.699
EAR60717.1
COG0415 Deoxyribodipyrimidine photolyase.
    
 
 0.685
EAR62855.1
COG1560 Lauroyl/myristoyl acyltransferase.
 
  
 0.658
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.