STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapFCOG0253 Diaminopimelate epimerase. (280 aa)    
Predicted Functional Partners:
EAR62865.1
COG0019 Diaminopimelate decarboxylase.
 
 0.995
EAR61412.1
Glutamate synthase large chain precursor; COG0067 Glutamate synthase domain 1.
  
 
 0.983
EAR62867.1
COG3159 Uncharacterized protein conserved in bacteria.
 
    0.980
EAR59781.1
COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
 
  
 0.971
EAR59771.1
COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ).
   
 0.959
EAR61106.1
Dinucleoside polyphosphate hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
 
 
 
 0.941
murE
UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
    
 0.938
EAR62868.1
COG4973 Site-specific recombinase XerC.
  
  
 0.895
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
 
 0.833
EAR63072.1
COG0527 Aspartokinases; Belongs to the aspartokinase family.
 
 
 0.831
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.