STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR62868.1COG4973 Site-specific recombinase XerC. (299 aa)    
Predicted Functional Partners:
EAR62867.1
COG3159 Uncharacterized protein conserved in bacteria.
 
    0.898
dapF
COG0253 Diaminopimelate epimerase.
  
  
 0.895
EAR62869.1
HAD-superfamily hydrolase subfamily IA, variant 1 and 3; COG1011 Predicted hydrolase (HAD superfamily).
  
    0.844
EAR62865.1
COG0019 Diaminopimelate decarboxylase.
     
 0.782
EAR62179.1
Cell division protein FtsK; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
  
   
 0.705
EAR62864.1
Hypothetical protein.
       0.663
EAR62174.1
Site-specific recombinase; COG0582 Integrase.
 
 
 
0.633
recR
COG0353 Recombinational DNA repair protein (RecF pathway).
  
   
 0.579
EAR62948.1
COG4974 Site-specific recombinase XerD.
 
 
 
0.556
EAR62561.1
ParB family protein; COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
  
   
 0.511
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.