Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR63110.1Hypothetical protein. (122 aa)    
Predicted Functional Partners:
EAR59707.1
Hypothetical protein.
  
     0.723
EAR60385.1
osmC-like family protein; COG1073 Hydrolases of the alpha/beta superfamily.
  
     0.720
EAR63109.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
       0.664
EAR63111.1
Hydrolase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.570
EAR63113.1
Transcription regulator, TetR family protein; COG1309 Transcriptional regulator.
       0.570
EAR63114.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
       0.408
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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