STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR60109.1L-serine dehydratase, iron-sulfur-dependent, single chain form; COG1760 L-serine deaminase. (110 aa)    
Predicted Functional Partners:
EAR60110.1
COG0112 Glycine/serine hydroxymethyltransferase.
  
 
 0.943
EAR60220.1
Phosphoserine phosphatase SerB:HAD-superfamily hydrolase, subfamily IB (PSPase-like); COG3830 ACT domain-containing protein.
   
 
 0.912
EAR61163.1
COG1171 Threonine dehydratase.
  
 
 0.906
EAR62950.1
COG0460 Homoserine dehydrogenase.
  
 
 0.883
EAR62919.1
COG1045 Serine acetyltransferase.
     
 0.866
EAR61401.1
COG0112 Glycine/serine hydroxymethyltransferase.
  
 
 0.864
EAR62543.1
COG3048 D-serine dehydratase.
     
 0.856
EAR59683.1
Aminotransferase, class V; COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
    
 0.845
EAR61762.1
COG0159 Tryptophan synthase alpha chain.
   
 
 0.825
EAR60112.1
COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain.
  
  
 0.798
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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