STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR60114.1Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator. (306 aa)    
Predicted Functional Partners:
EAR60115.1
Probable DctQ (C4-dicarboxylate permease, small subunit); COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.836
EAR60174.1
COG0583 Transcriptional regulator.
  
     0.771
EAR60181.1
COG0583 Transcriptional regulator.
  
     0.762
EAR60117.1
Probable DctP (periplasmic C4-dicarboxylate binding protein); COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.758
EAR60459.1
Regulatory protein, LysR:LysR, substrate-binding; COG0583 Transcriptional regulator.
  
     0.754
EAR61254.1
Regulatory protein, LysR:LysR, substrate-binding; COG0583 Transcriptional regulator.
  
     0.754
EAR60298.1
Putative transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator.
  
     0.745
EAR62544.1
Hypothetical D-serine deaminase activator; COG0583 Transcriptional regulator.
  
     0.741
EAR59578.1
Transcriptional Regulator, LysR family protein; COG0583 Transcriptional regulator.
  
     0.740
EAR59975.1
LysR family regulatory protein; COG0583 Transcriptional regulator.
  
     0.735
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.