STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR60499.1Metallo-beta-lactamase superfamily protein; COG0491 Zn-dependent hydrolases, including glyoxylases. (257 aa)    
Predicted Functional Partners:
EAR60334.1
COG0346 Lactoylglutathione lyase and related lyases.
 
  
 0.987
EAR60061.1
Putative metallo-beta-lactamase family protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
  
  
0.915
thiI
Thiamin biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
  
 0.830
EAR60795.1
Putative D-lactate dehydrogenase, FAD protein, NADH independent; COG0277 FAD/FMN-containing dehydrogenases.
  
  
 0.797
EAR59886.1
COG1052 Lactate dehydrogenase and related dehydrogenases.
  
 
 0.764
EAR62088.1
FAD linked oxidase, C-terminal: FAD linked oxidase, N-terminal; COG0277 FAD/FMN-containing dehydrogenases.
     
 0.750
EAR61792.1
Hypothetical protein; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
     
 0.717
rnhA
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
     
 0.708
dnaQ
DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
     
 0.708
EAR61129.1
NAD(P)H-flavin reductase; COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
     
 0.694
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.