STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR60620.1NADH ubiquinone oxidoreductase, 20 kDa subunit; COG1740 Ni,Fe-hydrogenase I small subunit. (317 aa)    
Predicted Functional Partners:
EAR60619.1
COG0374 Ni,Fe-hydrogenase I large subunit.
 0.996
EAR61940.1
COG0374 Ni,Fe-hydrogenase I large subunit.
 0.985
EAR61941.1
COG0374 Ni,Fe-hydrogenase I large subunit.
 0.985
EAR61269.1
COG0374 Ni,Fe-hydrogenase I large subunit.
 
 0.982
EAR61268.1
COG1969 Ni,Fe-hydrogenase I cytochrome b subunit.
 
 
 0.980
EAR61951.1
HupH hydrogenase expression/formation protein; COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes.
 
 
 0.822
EAR61948.1
COG0680 Ni,Fe-hydrogenase maturation factor.
 
  
 0.814
EAR60618.1
Peptidase M52, hydrogen uptake protein; COG0680 Ni,Fe-hydrogenase maturation factor.
  
  
 0.814
EAR60617.1
Signal transduction protein containing membrane, EAL and GGDEF domains-like; COG2202 FOG: PAS/PAC domain.
   
  0.807
EAR61953.1
HupJ, contains rubredoxin domain.
 
 
 0.805
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.