STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR59671.1Radical SAM domain protein; COG1032 Fe-S oxidoreductase. (299 aa)    
Predicted Functional Partners:
EAR60997.1
Hypothetical protein.
 
 
 0.926
EAR59670.1
TatD-like deoxyribonuclease; COG0084 Mg-dependent DNase.
       0.781
EAR59669.1
Type 4 fimbrial biogenesis protein PilZ; COG3215 Tfp pilus assembly protein PilZ.
       0.675
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
  
 
 0.579
ppk2
Hypothetical protein.
   
    0.574
EAR61385.1
UDP-galactose-lipid carrier transferase.
   
    0.574
EAR59672.1
COG0039 Malate/lactate dehydrogenases.
       0.479
EAR60931.1
COG2841 Uncharacterized protein conserved in bacteria.
   
    0.474
EAR60165.1
COG2841 Uncharacterized protein conserved in bacteria.
   
    0.474
EAR60904.1
Hypothetical protein; COG2384 Predicted SAM-dependent methyltransferase.
  
     0.449
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.