STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR61247.1COG0520 Selenocysteine lyase. (551 aa)    
Predicted Functional Partners:
EAR59654.1
FeS cluster assembly scaffold IscU; COG0822 NifU homolog involved in Fe-S cluster formation.
  
 0.998
EAR62181.1
COG0492 Thioredoxin reductase.
 
 
 0.876
EAR59734.1
Molybdopterin biosynthesis MoeB protein; COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1.
   
 
 0.857
EAR60492.1
COG1252 NADH dehydrogenase, FAD-containing subunit.
    
  0.832
EAR61768.1
O-succinylhomoserine sulfhydrylase; COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.
    
 0.829
nfuA
yhgI protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
 
 0.799
EAR61892.1
COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain.
    
  0.791
EAR60112.1
COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain.
    
  0.791
iscS
COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
    
0.789
EAR61244.1
COG1393 Arsenate reductase and related proteins, glutaredoxin family.
     
 0.776
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.