STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR59887.1COG3317 Uncharacterized lipoprotein. (458 aa)    
Predicted Functional Partners:
EAR61466.1
Competence lipoprotein ComL, putative; COG4105 DNA uptake lipoprotein.
  
 
 
 0.974
bamA
Probable outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.973
EAR62913.1
Outer membrane lipoprotein OmlA; COG2913 Small protein A (tmRNA-binding).
  
 
 0.971
EAR59666.1
PQQ enzyme repeat domain protein; COG1520 FOG: WD40-like repeat.
  
 
 0.950
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
  
  
 0.824
EAR60922.1
Hypothetical protein; COG1340 Uncharacterized archaeal coiled-coil protein.
  
     0.771
EAR60924.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.770
EAR60346.1
Hypothetical protein; COG1639 Predicted signal transduction protein.
  
    0.766
EAR60369.1
Putative sigma-E factor regulatory protein RseB; COG3073 Negative regulator of sigma E activity.
  
     0.762
EAR61621.1
Hypothetical protein.
  
     0.758
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.