STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR59484.1COG1643 HrpA-like helicases. (520 aa)    
Predicted Functional Partners:
EAR59486.1
COG1643 HrpA-like helicases.
     0.990
EAR60146.1
ATP-dependent helicase HrpB; COG1643 HrpA-like helicases.
 
     0.926
rapA
Probable ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
  
 0.920
EAR60098.1
Hypothetical protein; COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase.
    
 0.916
EAR61505.1
COG0522 Ribosomal protein S4 and related proteins.
   
  0.911
EAR60910.1
COG0349 Ribonuclease D.
   
  0.895
EAR61506.1
COG0100 Ribosomal protein S11.
    
 0.865
EAR60914.1
COG0539 Ribosomal protein S1.
  
 0.798
EAR60804.1
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
 0.798
EAR59470.1
COG0186 Ribosomal protein S17.
   
  0.777
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.