STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR62339.1COG0251 Putative translation initiation inhibitor, yjgF family. (116 aa)    
Predicted Functional Partners:
alr
COG0787 Alanine racemase.
  
    0.805
EAR60808.1
Chorismate mutase, gamma, beta and epsilon proteobacteria; COG1605 Chorismate mutase.
  
 
  0.725
aroA
Still frameshift 3-phosphoshikimate 1-pcarboxyvinyltransferase prephenate dehydrogenase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
    
  0.691
EAR62337.1
Endoribonuclease; COG0251 Putative translation initiation inhibitor, yjgF family.
     
 0.686
EAR61202.1
COG0689 RNase PH.
  
   0.559
EAR62336.1
D-amino acid dehydrogenase small subunit; COG0665 Glycine/D-amino acid oxidases (deaminating).
  
    0.548
bioC
Biotin synthesis protein BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.
  
  0.496
EAR59451.1
COG0480 Translation elongation factors (GTPases).
    
  0.461
EAR59638.1
COG0480 Translation elongation factors (GTPases).
    
  0.461
EAR61399.1
Riboflavin biosynthesis protein RibD; COG0117 Pyrimidine deaminase.
  
   0.439
Your Current Organism:
Neptuniibacter caesariensis
NCBI taxonomy Id: 207954
Other names: CCUG 52065, CECT 7075, N. caesariensis, Neptuniibacter caesariensis Arahal et al. 2007, Oceanospirillum sp. MED92, strain MED92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.